Visual FoxPro General
Generally you should have no problems.
The two major areas that might give you a little trouble are SQL queries where you have aggregation using GROUP BY. The language is now more ANSI 92 compliant and some queries doen before could give errors. Now it forces you to do them right.
See:
http://fox.wikis.com/wc.dll Wiki~Enginebehavior
http://msdn2.microsoft.com/en-us/library/ax9aye37(VS.80).aspx
In any case, you should fix your queries. Set Enginebehavior is there to get you running in a short time, but does not fix the underlying problem and you could potentially be returning wrong results.
VFP9 does a stricter check of file integrity. This may give you problems with some tables that have some corruption issues that were previously undetected.
See:
http://msdn2.microsoft.com/en-us/library/a368y56z(VS.80).aspx
http://fox.wikis.com/wc.dll Wiki~SetTablevalidate
HTH